Powdery mildew-infected Arabidopsis epidermal cell. (Serry Koh, Shauna Somerville lab.)

At 18 hours after infection by the fungal pathogen, powdery mildew (Erysiphe cichoracearum), a leaf sample was stained with propidium iodide to highlight fungal structures. The plant plasma membrane is visualized with a GFP-tagged marker (Q8, arrows). The image shown is a z-series projection.

The haustorium (H) is a fungal feeding structure formed in the plant epidermal cell (Ep) about 20 hours after penetration by an appressorium (A). The mature haustorium has expanded lobe structures (arrowheads) and a nucleus (nc). A host-derived extrahaustorial membrane (EHM) encases the haustorium separating it from plant cytoplasm (dotted line). The characteristics of the EHM are largely unknown. Biochemical evidence suggests that the EHM is a unique membrane, different from the plant plasma membrane. The discontinuity of the plasma membrane protein::GFP signal at the haustorial neck (yellow arrow), where the EHM starts, provides the clear optical evidence suporting the distinct nature of the EHM. A fungal conidium is also visible in this image.

Nomarski/DIC image of an Arabidopsis epidermal peel showing elongated pavement cells and kidney-shaped guard cells (Wolfgang Lukowitz, Chris Somerville's lab, Carnegie Institution, Dept. of Plant Biology).
The epidermis of Arabidopsis stems contains two cell types, pavement cells and guard cells. The guard cells are paired and flank a pore that can open and close to allow the exchange of carbon dioxide and water vapor. Normally, very few guard cells are present on the stem, but in the yoda mutant shown here, extra guard cells appear in contact with one another.

Spot image (left) and clustering tree (right) of cDNA microarray.
A spot image generated from cDNA microarray (on the left). Two samples, one labeled with Cy3 and the other labeled with Cy5, hybridize on a microarray chip, a piece of glass containing thousands of spots of cDNA each representing a known gene. Genes more expressed in the Cy5 labeled sample are shown in red, those more expressed in the Cy3 labeled sample are in green, and genes similarly expressed in both samples are shown in yellow. The five columns on the right represent gene expression pattern under five experimental conditions. Genes having similar expression patterns are organized as a clustering tree.

Confocal image of propidium iodide stained Arabidopsis root treated with novel plant growth regulator. (Dominique Bergmann, Chris Somerville's Lab, Carnegie Institution)

Advances in synthetic chemistry have made it possible to create numerous small molecules with potential biological activity. A library of 10,000 unique compounds was screened for effects on root growth. This compound induced the formation of lateral roots at the root/hypocotyl junction of a 7-day old Arabidopsis seedling. Two well-formed lateral roots are visible at the lower left immediately below a fused set of lateral roots. The curled tube-like structures on the right are root hairs and root epidermal cells that have peeled away as the lateral roots emerged from the internal tissues.

Confocal image of an Arabidopsis root tip expressing a GFP reporter in the endodermis (green) and counterstained with propidium iodide to visualize cell outlines (red). (Dominique Bergmann, Chris Somerville's Lab, Carnigie Intstitution, Dept of Plant Biology)
The Arabidopsis root consists of radially arranged tissues that are generated by divisions of the root meristem at the tip. Each layer has specialized functions, and many genes are expressed in a tissue-specific manner. In this image, green fluorescent protein is expressed in the domain of the transcription factor SCARECROW. In a wild type root, SCR::GFP expression is in the center of the meristem as well as in the cylinder of endodermal cells, however, in the lonesome highway mutant shown here, expression is missing from the meristem.
Nomarski/DIC image of 7-day old Arabidopsis cotyledon expressing the VH1::GUS marker (blue) in developing veins (Dominique Bergmann, Chris Somerville’s lab, Carnegie Institution, Dept. of Plant Biology).
Veins in the cotyledons (embryonic leaves) of Arabidopsis are arranged in a stereotyped pattern. Within the mature vein are both phloem (to transport nutrients) and xylem (to transport water). In this image, the precursors to these tissue types, the provascular cells, express the VASCULAR HIGHWAY::GUS reporter.

Petunia half-flower

Anthocyanin pigments provide most of the red, purple, and blue colors of flowers, and this pigmentation provides a natural "reporter gene" assay for the activities of transposable elements in many plants. Here a transposon disrupts the an9 gene of Petunia; an9 encodes a glutathione S-transferase that acts as a carrier protein for anthocyanins in the cytoplasm. The plant is an an9-mutable homozygote. The allele with the transposon lacks the AN9 protein, hence anthocyanin accumulates in the cytoplasm where it confers only a pale pink color. In some cells, the transposon excises from the mutable an9 allele in a manner that restores gene function. In cells with functional AN9 the pigment is transferred to the vacuole; in this acidic cellular compartment the pigmentation is much more intense and red. The timing of transposon excision can be assessed by the size of the sectors: most excisions occur late in development and result in small red sectors because there are only a few cell divisions of the revertant cell. In this particular flower, however, an excision event occurred early in plant life such that half of the floral meristem that produced this flower was revertant. As a consequence, some progeny seed collected from this flower will be true-breeding red. (Walbot Lab)

Picture of kernels and leaf Mu, bz2

The BRONZE2 protein of maize encodes a glutathione S-transferase that performs the same carrier protein function as AN9 in Petunia. BZ2 and AN9 are an interesting case of convergent evolution of function: the two proteins are only 11% similar yet they can reciprocally complement. More closely related GST proteins of either Petunia or maize fail to complement in the original host plant or in transient assays in the alternate host.

An interesting aspect of host control of Mu transposons is illustrated in this figure. Using a mutable bz2::Mu reporter allele only small revertant sectors are observed. This is in contrast with the Petunia transposon behavior that can excise at any time during plant development. Although the transcripts encoding transposase and the transposase protein are constitutively expressed, excision activity is restricted to the final few cell divisions throughout the plant. Does the host confer developmental timing by altering the transposase protein, by expressing gene products required for transposition only late in development, by changing chromatin configuration during cellular differentiation? These questions can be generalized to all aspects of cellular differentiation -- in a field of cells progressing through a developmental program, how do the cells know that only a few more cell divisions will occur? How do plant organs and tissues achieve a final cell number, despite the variation in the actual number of cells within successive organs such as leaves? Another important aspect of somatic excision activity is that in most cases Mu elements excise without reinserting. If this behavior occurred in reproductive cells all the Mu elements would be lost. Yet, Mu elements are very effective mutagens and can increase their copy number in progeny of a Mutator plant. (Walbot Lab)

Confocal image of a cluster of stomata. Stomata are pores in the epidermis of leaves and other above-ground plant organs that regulate the entry of carbon dioxide and exit of water vapor. In this image, a cluster of stomata in the bocca a bocca mutant are visualized by a dye that stains cell walls (in red) and a tubulin::green fluorescent protein fusion that marks the microtubule cytoskeleton. Overlap in the microtubule and cell wall staining is seen at the yellow 'mouths'. (Image from Dominique Bergmann)
Nomarksi image of cleared leaf in fama mutant. Normal stomata consist of two guard cells and a pore. In the fama mutant, the behavior of the mother of the two guard cells is changed such that this cell keeps dividing--producing more and more guard cells that cannot properly mature to form pores. Plants with mutations in FAMA cannot obtain enough carbon dioxide for growth and die as very small pale seedlings. (Image from Dominique Bergmann)
Confocal image of a cluster of stomata in the yoda mutant. Stomatal guard cells are one of three major cell types in the epidermis. Plants must balance the number of stomata they make relative to the other cells types to optimize photosynthetic growth while preventing water loss. The YODA gene plays a key role in maintaining this balance and encodes a MAPKK kinase—part of a cellular signaling pathway. Without YODA (this image) nearly all of the cells are guard cells. With too much YODA, none of the cells become guard cells. (Image from Dominique Bergmann)
Maize anthers

The BRONZE2 protein of maize encodes a glutathione S-transferase that performs the same carrier protein function as AN9 in Petunia. BZ2 and AN9 are an interesting case of convergent evolution of function: the two proteins are only 11% similar yet they can reciprocally complement. More closely related GST proteins of either Petunia or maize fail to complement in the original host plant or in transient assays in the alternate host. Observing maize anthers with the bz2::MuDR allele indicates that transposon excision in the outer layers of the anther occurs late in development. This deduction is possible because the resulting purple sectors on a bronze background are uniformly small. Mu elements exhibit high frequency, late excision throughout the plant. In the cell divisions before cells are specified to initiate meiosis, Mutator activity is also occuring, but the biochemical outcome is different. Instead of excision, an alternative transposase protein catalyzes a net replicative Mu element movement. This means that the original site (such as bz2::MuDR) retains it's transposon while new copies of the transposon are inserted elsewhere; the genetic consequences are a high forward mutation frequency without germinal (heritable) revertant alleles. The MuDR element actually encodes three distinct transposase proteins as a result of alternative splicing events. The transposase responsble for insertion events utilizes a novel start site of transcription, a different first intron, and frameshift translation for synthesis. (Walbot Lab)